Publications
63 publications · 15,000+ citations · h-index 30
Showing 63 of 63 publications
2026
Deep Learning on Histopathological Images to Predict Breast Cancer Recurrence Risk and Chemotherapy Benefit
G Shamai, S Cohen, Y Binenbaum ... D Aran
SOMtime the World Ain't Fair: Violating Fairness Using Self-Organizing Maps
J Bingham, N Arussy, D Aran
2025
A Multi-Agent Approach to Neurological Clinical Reasoning
M Sorka, A Gorenshtein, D Aran, S Shelly
AI Based Clinical Decision-Making Tool for Neurologists in the Emergency Department
A Gorenshtein, S Fistel, M Sorka ... S Shelly
AI vs Human Performance in Conversational Hospital-Based Neurological Diagnosis
M Sorka, A Gorenshtein, H Abramovitch, P Soontrapa, S Shelly, D Aran
Agent-guided AI-powered Interpretation and Reporting of Nerve Conduction Studies and EMG (INSPIRE)
A Gorenshtein, M Sorka, M Khateb, D Aran, S Shelly
CellMentor: Cell-Type Aware Dimensionality Reduction for Single-cell RNA-Sequencing Data
O Hevdeli, E Petrenko, D Aran
Evaluating GPT-4 as a Clinical Decision Support Tool in Ischemic Stroke Management
AH Shmilovitz, M Katson, M Cohen-Shelly, S Peretz, D Aran, S Shelly
Fine-Pruning: A Biologically Inspired Algorithm for Personalization of Machine Learning Models
J Bingham, S Zonouz, D Aran
LITERAS: Literature Review and Citation Retrieval Agents
A Gorenshtein, K Shihada, M Sorka, D Aran, S Shelly
Machine-learning of medical cannabis chemical profiles reveals analgesia beyond placebo expectations
A Hatav, Y Vysotski, A Shapira, S Procaccia, D Meiri, D Aran
Over- and Under-estimation of Vaccine Effectiveness
H De-Leon, D Aran
SLAYER: A Computational Framework for Identifying Synthetic Lethal Interactions through Integrated Analysis of Cancer Dependencies
Z Cohen, E Petrenko, AS Barisaac ... D Aran
Survival and Autoimmune Risks Post-Thymectomy: Insights from Myasthenia Gravis and Non-MG Populations
I Tsirkin, M Khateb, D Aran, A Kaz, S Shelly
Tumor Cell-Adipocyte Gap Junctions Activate Lipolysis and Contribute to Breast Tumorigenesis
J Williams, R Camarda, S Malkov ... A Goga
xCell 2.0: Robust Algorithm for Cell Type Proportion Estimation Predicts Response to Immune Checkpoint Blockade
A Angel, L Naom, S Nabet-Levy, D Aran
2024
Comparative Efficacy of Combined CTLA-4 and PD-1 Blockade vs. PD-1 Monotherapy in Metastatic Melanoma: A Real-World Study
A Klein-Brill, S Amar-Farkash, K Rosenberg-Katz, R Brenner, JC Becker, D Aran
Defective interferon signaling in the circulating monocytes of type 2 diabetic mice
S Omodaka, Y Kato, Y Sato ... J Liu
Inhibition of Osteosarcoma Metastasis in vivo by Targeted Downregulation of MMP1 and MMP9
O Doppelt-Flikshtain, T Asbi, A Younis ... H Zigdon-Giladi
Integration of Transcription Regulation and Functional Genomic Data Reveals lncRNA SNHG6's Role in Hematopoietic Differentiation and Leukemia
JM Hazan, R Amador, T Ali-Nasser ... AC Bester
Transformer-Based Time-to-Event Prediction for Chronic Kidney Disease Deterioration
M Zisser, D Aran
Twenty-Five Years of AI in Neurology: The Journey of Predictive Medicine and Biological Breakthroughs
B Gutman, AH Shmilovitch, D Aran, S Shelly
2023
Comparative Analysis of First-Line FOLFOX Treatment With and Without Anti-VEGF Therapy in Metastatic Colorectal Carcinoma: A Real-World Data Study
R Brenner, S Amar-Farkash, A Klein-Brill, K Rosenberg-Katz, D Aran
Exhausted Intratumoral Vδ2− γδ T Cells in Human Kidney Cancer Retain Effector Function
C Rancan, M Arias-Badia, P Dogra ... L Fong
MAM: Flexible Monte-Carlo Agent Based Model for Modelling COVID-19 Spread
H De-Leon, D Aran
2022
Comparison of FOLFIRINOX vs Gemcitabine Plus Nab-Paclitaxel as First-Line Chemotherapy for Metastatic Pancreatic Ductal Adenocarcinoma
A Klein-Brill, S Amar-Farkash, G Lawrence, EA Collisson, D Aran
2021
CNS Fibroblasts Form a Fibrotic Scar in Response to Immune Cell Infiltration
CE Dorrier, D Aran, EA Haenelt ... R Daneman
Estimating Real-World COVID-19 Vaccine Effectiveness in Israel Using Aggregated Counts
H De-Leon, R Calderon-Margalit, F Pederiva, Y Ashkenazy, D Aran
Initial Real World Evidence for Lower Viral Load of Individuals Who Have Been Vaccinated by BNT162b2
H De-Leon, F Pederiva, D Aran
Molecular Programs of Fibrotic Change in Aging Human Lung
S Lee, MN Islam, K Boostanpour ... M Bhattacharya
2020
Development and Validation of a Machine-Learning Model for Prediction of Shoulder Dystocia
A Tsur, L Batsry, S Toussia-Cohen ... D Aran
Human Splice Factors Contribute to Latent HIV Infection in Primary Cell Models and Blood CD4+ T Cells from ART-Treated Individuals
S Moron-Lopez, S Telwatte, I Sarabia ... SA Yukl
Implementation of Machine Learning Models for the Prediction of Vaginal Birth After Cesarean Delivery
R Meyer, N Hendin, M Zamir ... A Tsur
Intratumoral CD4 T Cells Mediate Anti-tumor Cytotoxicity in Human Bladder Cancer
DY Oh, SS Kwek, SS Raju ... L Fong
Prior Presumed Coronavirus Infection Reduces COVID-19 Risk: A Cohort Study
D Aran, DC Beachler, S Lanes, JM Overhage
2019
CD161 Contributes to Prenatal Immune Suppression of IFNγ-Producing PLZF+ T Cells
J Halkias, E Rackaityte, SL Hillman ... TD Burt
Comprehensive Transcriptomic Analysis of Cell Lines as Models of Primary Tumors across 22 Tumor Types
K Yu, B Chen, D Aran ... M Sirota
EpiSort: Enumeration of cell types using targeted bisulfite sequencing
D Aran, R S Dover, K E Lundy ... A J Butte
Heterogeneity in HIV and Cellular Transcription Profiles in Cell Line Models of Latent and Productive Infection
S Telwatte, S Morón-López, D Aran ... SA Yukl
Reference-Based Analysis of Lung Single-Cell Sequencing Reveals a Transitional Profibrotic Macrophage
D Aran, AP Looney, L Liu ... M Bhattacharya
2018
Global Transcriptome Analysis of RNA Abundance Regulation by ADAR in Lung Adenocarcinoma
MF Sharpnack, B Chen, D Aran ... K Huang
2017
Cancer Cell-Autonomous Parainflammation Mimics Immune Cell Infiltration
A Lasry, D Aran, AJ Butte, Y Ben-Neriah
Comprehensive Analysis of Normal Adjacent to Tumor Transcriptomes
D Aran, R Camarda, J Odegaard ... AJ Butte
Precision Annotation of Digital Samples in NCBI's Gene Expression Omnibus
D Hadley, J Pan, O El-Sayed ... AJ Butte
xCell: Digitally Portraying the Tissue Cellular Heterogeneity Landscape
D Aran, Z Hu, AJ Butte
2016
Cross-Tissue Analysis of Gene and Protein Expression in Normal and Cancer Tissues
I Kosti, N Jain, D Aran, AJ Butte, M Sirota
Embryonic Stem Cell (ES)-Specific Enhancers Specify the Expression Potential of ES Genes in Cancer
D Aran, M Abu-Remaileh, R Levy ... A Hellman
Widespread Parainflammation in Human Cancer
D Aran, A Lasry, A Zinger ... Y Ben-Neriah
2015
Premature Aging of Leukocyte DNA Methylation Is Associated with Type 2 Diabetes Prevalence
G Toperoff, JD Kark, D Aran ... A Hellman
Systematic Pan-Cancer Analysis of Tumour Purity
D Aran, M Sirota, AJ Butte
2014
2013
Aging Is Associated with Highly Defined Epigenetic Changes in the Human Epidermis
G Raddatz, S Hagemann, D Aran ... F Lyko
DNA Methylation of Distal Regulatory Sites Characterizes Dysregulation of Cancer Genes
D Aran, S Sabato, A Hellman
2012
Genome-Wide Survey Reveals Predisposing Diabetes Type 2-Related DNA Methylation Variations in Human Peripheral Blood
G Toperoff, D Aran, JD Kark ... A Hellman
2011
Replication Timing-Related and Gene Body-Specific Methylation of Active Human Genes
D Aran, G Toperoff, M Rosenberg, A Hellman