Publications

(2019). Heterogeneity in HIV and cellular transcription profiles in cell line models of latent and productive infection: Implications for HIV latency. Retrovirology.

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(2019). Development and validation of a machine learning model for prediction of shoulder dystocia. Ultrasound in Obstetrics & Gynecology.

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(2019). Reference-based analysis of lung single-cell sequencing reveals a transitional profibrotic macrophage. Nature Immunology.

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(2019). EpiSort: Enumeration of cell types using targeted bisulfite sequencing. bioRxiv.

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(2017). xCell: Digitally portraying the tissue cellular heterogeneity landscape. Genome Biology.

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(2017). Comprehensive analysis of normal adjacent to tumor transcriptomes. Nature Communications.

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(2017). Precision annotation of digital samples in NCBI's gene expression omnibus. Scientific Data.

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(2017). Global Transcriptome Analysis of RNA Abundance Regulation by ADAR in Lung Adenocarcinoma. EBioMedicine.

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(2017). Cancer cell–autonomous parainflammation mimics immune cell infiltration. Cancer Research.

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(2016). Widespread parainflammation in human cancer. Genome Biology.

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(2016). Cross-tissue Analysis of Gene and Protein Expression in Normal and Cancer Tissues. Scientific Reports.

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(2016). Embryonic Stem Cell (ES)-Specific Enhancers Specify the Expression Potential of ES Genes in Cancer. PLoS Genetics.

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(2016). Digitally deconvolving the tumor microenvironment.. Genome biology.

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(2015). Systematic pan-cancer analysis of tumour purity. Nature Communications.

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(2015). Premature aging of leukocyte dna methylation is associated with type 2 diabetes prevalence. Clinical epigenetics.

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(2013). DNA methylation of distal regulatory sites characterizes dysregulation of cancer genes. Genome Biology.

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(2013). Aging is associated with highly defined epigenetic changes in the human epidermis.. Epigenetics & chromatin.

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(2012). Genome-wide survey reveals predisposing diabetes type 2-related DNA methylation variations in human peripheral blood. Human Molecular Genetics.

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(2011). Replication timing-related and gene body-specific methylation of active human genes. Human Molecular Genetics.

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