Publications

Dvir Aran, Daniel C. Beachler, Stephan Lanes, J. Marc Overhage (2020). Prior Presumed Coronavirus Infection Reduces COVID-19 Risk: A Cohort Study. Journal of Infection.

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Sushama Telwatte, Sara Morón-López, **Dvir Aran**, Peggy Kim, Christine Hsieh, Sunil Joshi, Mauricio Montano, Warner C. Greene, Atul J. Butte, Joseph K. Wong, Steven A. Yukl (2019). Heterogeneity in HIV and cellular transcription profiles in cell line models of latent and productive infection: Implications for HIV latency. Retrovirology.

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Abraham Tsur, Linoy Batsry, Shlomo Toussia‐Cohen, Melissa G. Rosenstein, Oren Barak, Yoav Brezinov, Rakefet Yoeli‐Ullman, Eyal Sivan, Marina Sirota, Maurice L. Druzin, David K. Stevenson, Yair J. Blumenfeld, Dvir Aran (2019). Development and validation of a machine learning model for prediction of shoulder dystocia. Ultrasound in Obstetrics & Gynecology.

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Dvir Aran, Agnieszka P. Looney, Leqian Liu, Esther Wu, Valerie Fong, Austin Hsu, Suzanna Chak, Ram P. Naikawadi, Paul J. Wolters, Adam R. Abate, Atul J. Butte, Mallar Bhattacharya (2019). Reference-based analysis of lung single-cell sequencing reveals a transitional profibrotic macrophage. Nature Immunology.

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Dvir Aran, Ron Dover, Karen E Lundy, Michael D Leipold, Ji Xuhuai, Shana L McDevitt, Mark M Davis, Atul J Butte (2019). EpiSort: Enumeration of cell types using targeted bisulfite sequencing. bioRxiv.

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Dvir Aran, Zicheng Hu, Atul J. Butte (2017). xCell: Digitally portraying the tissue cellular heterogeneity landscape. Genome Biology.

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D. Aran, R. Camarda, J. Odegaard, H. Paik, B. Oskotsky, G. Krings, A. Goga, M. Sirota, A.J. Butte (2017). Comprehensive analysis of normal adjacent to tumor transcriptomes. Nature Communications.

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D. Hadley, J. Pan, O. El-Sayed, J. Aljabban, I. Aljabban, T.D. Azad, M.O. Hadied, S. Raza, B.A. Rayikanti, B. Chen, H. Paik, D. Aran, J. Spatz, D. Himmelstein, M. Panahiazar, S. Bhattacharya, M. Sirota, M.A. Musen, A.J. Butte (2017). Precision annotation of digital samples in NCBI's gene expression omnibus. Scientific Data.

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M.F. Sharpnack, B. Chen, D. Aran, I. Kosti, D.D. Sharpnack, D.P. Carbone, P. Mallick, K. Huang (2017). Global Transcriptome Analysis of RNA Abundance Regulation by ADAR in Lung Adenocarcinoma. EBioMedicine.

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A. Lasry, D. Aran, A.J. Butte, Y. Ben-Neriah (2017). Cancer cell–autonomous parainflammation mimics immune cell infiltration. Cancer Research.

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Dvir Aran, Audrey Lasry, Adar Zinger, Moshe Biton, Eli Pikarsky, Asaf Hellman, A.J. Atul J. Butte, Yinon Ben-Neriah (2016). Widespread parainflammation in human cancer. Genome Biology.

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Idit Kosti, Nishant Jain, Dvir Aran, A.J. Atul J. Butte, Marina Sirota (2016). Cross-tissue Analysis of Gene and Protein Expression in Normal and Cancer Tissues. Scientific Reports.

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Dvir Aran, Monther Abu-Remaileh, Revital Levy, Nurit Meron, Gidon Toperoff, Yifat Edrei, Yehudit Bergman, Asaf Hellman (2016). Embryonic Stem Cell (ES)-Specific Enhancers Specify the Expression Potential of ES Genes in Cancer. PLoS Genetics.

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Dvir Aran, Atul J Butte (2016). Digitally deconvolving the tumor microenvironment.. Genome biology.

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Dvir Aran, Marina Sirota, A.J. Atul J. Butte (2015). Systematic pan-cancer analysis of tumour purity. Nature Communications.

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Gidon Toperoff, Jeremy D J.D. Kark, Dvir Aran, Hisham Nassar, W. Abu Ahmad, Ronit Sinnreich, Dima Azaiza, Benjamin Glaser, Asaf Hellman, Wiessam Abu Ahmad, Ronit Sinnreich, Dima Azaiza, Benjamin Glaser, Asaf Hellman (2015). Premature aging of leukocyte dna methylation is associated with type 2 diabetes prevalence. Clinical epigenetics.

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D. Aran, A. Hellman (2014). Unmasking risk loci: DNA methylation illuminates the biology of cancer predisposition: Analyzing DNA methylation of transcriptional enhancers reveals missed regulatory links between cancer risk loci and genes. BioEssays.

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D. Aran, A. Hellman (2013). DNA methylation of transcriptional enhancers and cancer predisposition. Cell.

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Dvir Aran, Sivan Sabato, Asaf Hellman (2013). DNA methylation of distal regulatory sites characterizes dysregulation of cancer genes. Genome Biology.

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Günter Raddatz, Sabine Hagemann, Dvir Aran, Jörn Söhle, Pranav P.P. Kulkarni, Lars Kaderali, Asaf Hellman, Marc Winnefeld, Frank Lyko (2013). Aging is associated with highly defined epigenetic changes in the human epidermis.. Epigenetics & chromatin.

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Gidon Toperoff, Dvir Aran, J.D. Jeremy D. Kark, Michael Rosenberg, Tatyana Dubnikov, Batel Nissan, Julio Wainstein, Yechiel Friedlander, Ephrat Levy-Lahad, Benjamin Glaser, Asaf Hellman (2012). Genome-wide survey reveals predisposing diabetes type 2-related DNA methylation variations in human peripheral blood. Human Molecular Genetics.

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D. Aran, G. Toperoff, M. Rosenberg, A. Hellman (2011). Replication timing-related and gene body-specific methylation of active human genes. Human Molecular Genetics.

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